Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015859072.1_cds_XP_016514188.1_26663
CDS Infomation

[gene=LOC107830987] [db_xref=GeneID:107830987] [protein=translation initiation factor IF-2, chloroplastic-like] [protein_id=XP_016514188.1] [location=join(85318..86820,86927..86959,87086..87199,87316..87465,87560..87658,87735..87797,88614..88769,88978..89043,89561..89791,90663..90938,91491..91679,92414..92575)] [gbkey=CDS]
Sequence

ATGACTAGTATGGCTTCCCTAGTGAGTTTGGGGAGTGTTTGTGGATGTTCTTCTGGTGGA
CAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTAGCCAACAACTTTAGAAAC
TTTAATAGAATTTGGGTTGGGAAAAGATGGCGTTATGTCTCTGTCTGTAGATACTCAGTT
ACCACGGATTTTGTTGCTGCTGATCAGGGGACATCAATTTCCCTTGATTCCTCATCCAGG
AATAATAAGGAGGATGATGCTGATCTCTTACTTAAGCCGTCCCCGAAACCACAGTTAAAA
CCCGGACCTAAACCTGGGCCTGCTTTAGGAATGGGTCCAGTCAGTAGGAATGGACCGGTC
AGTAGCTCTGGTTCTGATGATGAAAAGGGAAATCCTAATGAAGAAGAGAGAAGCACGGTC
ATTGAGTCACTTGGAGAGGCATTAGAGAAAGCAGAGAAGCTAGAAACTAACAGAAAAGCA
AATGTGTTGGTTAATAATAAGTCGTCTGCCAATGCACGTACTGCACAAAGAAATAGCAAG
CCAGTTGATTCTGATGATTCTTCCAACAGGAAGTCCAAAACTTTGAAGAGTGTCTGGAAA
AAAGGGAATCCAGTTGCTGCTATACAAAAAGTTGTAAAACCACCACCCCCTAAACAGGAA
CCAGTGGCTGATAGTGGAATTAGGAAGAGTGAGTCTCAAACTGTTGCCCCGCTAAAACCC
CCTCAGCCACCCCAGAAGGTTCAACCACAGTTACAAGCAAGACCCTCTGTAGCTCCTCCT
CCCCCTGTTATCAAGAAACCGGTGATATTAAAGGATGTCGGTGCAGCGGCAAAGCCGCCA
CCCACTGATGAAATTGAATCAGCTGGAAAGACCAAAGAACGGAAGACAATATTGGTCGAC
AAGTTTGCTTCCAAGAAACCAGCTGTTGATCCTATGATTGCTCAGGCTGTTTTAGCTCCT
ACAAAACCTGGAAAGAGCGCACCTCCTGGTAGATTCAGGGAAGAGTTCCGGAAAAAAAGT
GGTGCATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCTGACGAGGAAGCA
TCAGAGCTTGATGTTTCGATTCCTGGTGCAGCAGCAAGGAAGGGAAGAAAGTGGACCAAG
GCAAGTCGCAAGGCAGCCCGACTTAGGGCTGCTAAAGAGTCTGCACCTGTCAAAGTAGAA
ATTCTAGAGGTTGGTGAAGAAGGCATGCCGACTGAGGAGTTGGCCTACAACTTAGCTACT
AGTGAAGGTGAAATCCTTGGTCTTCTATACTCAAAAGGAATCAAGCCTGATGGTGTGCAA
ACTCTCAGTAATGACATGGTGAAGATGGTTTGTAAAGAATATGAAGTGGAAGTTATTGAT
GCTGCCACCGTTAAAGTGGAAGAGATGGCGAGAAAGAAGGAAATTTTCGATGAAGATGAC
TTAGACAAATTACAAGATAGACCCCCCGTCATAACTATAATGGGTCATGTTGATCATGGA
AAGACTACTCTCTTGGACCATATACGCAAGACCAAGGTGGCGGCGTCTGAAGCTGGTGGA
ATTACTCAAGGAATTGGGGCGTATAAGGTGCAAGTTCCTATTGACACCAAGCCCCAGATA
TGTGTTTTCCTTGATACACCTGGACACGAGGCGTTTGGGGCAATGAGAGCTCGTGGAGCA
AGAGTAACAGACATTGCTATCATTGTAGTAGCTGCTGATGATGGTATTCGGCCTCAGACA
AATGAGGCCATAGCACATGCCAAGGCAGCTGGAGTTCCGATTGTGATTGCCATAAATAAG
ATTGATAAGGATGGAGCAAATCCTGAGCGAGTCATGCAAGAACTTTCCTCCATTGGTTTG
ATGCCAGAAGATTGGGGCGGTGACGTTCCAATGGTTCAGATCAGTGCTCTTAAAGGAGAG
AATATAGACGATTTGCTGGAGACGGTCATGCTTGTTGCGGAGTTGCAAGAGTTGAAGGCT
AATCCTCAAAGAAATGCCAAGGGAACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGG
CCTGTAGCAACGTTCATTGTGCAGAATGGTACACTTAAAGGAGGAGACGTAGTAGTTTGT
GGTGAAGCTTATGGAAAGGTGCGGGCTCTGTTTGATGATAAGGGAAAGCGTGTTGATGAA
GCCGGACCCTCCATACCTGTGCAGGTAATTGGATTGAACAATGTTCCAGTTGCTGGTGAC
GAGTTTGAGGTTGTTGGGTCCCTTGATGTTGCTCGTGAAAAAGCCGAAGCACGAGAGGAG
TCCTTGCGAACTGAGCGTTTATCAGCGAAGGCCGGAGATGGGAAAATTACACTCTCTTCT
TTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTGAATATTATTCTG
AAAGTTGATCTTCAGGGATCGATTGAGGCGGTCAGACAAGCTCTTCAGGTTCTTCCACAG
GATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGACCGCCAGTGATGTT
GATCTTGCTGTAGCAAGTAAAGCTATTATTTTCGGCTTTAATGTTAAAACTCCGGGTTCT
GTCAAGAGCTATGCAGACAATAAAGGTGTTGAGATCCGACTGTACAAAGTTATATATGAG
CTTATTGATGATGTGCGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAGGAACAAGTG
CCAATTGGTTCAGCAGAAGTACGTGCTGTGTTCAGCAGTGGTAGTGGTCGTGTTGCTGGA
TGCATGGTAACAGAGGGAAAAGTAGTGGAAGACTGTGGTATTCGTGTTGTTAGGAAAGGC
AAAGAAGTTCATGTTGGTGTGCTTGAATCTTTAAGACGGGTGAAGGAAGCTGTGAAAGAG
GTTAATGCCGGACTGGAGTGTGGAATTGGGGTTGAGGAGTTCGATGACTGGGAGGTGGGT
GATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTTGAGGAGGCTTCAGCT
TCAATGGCAGCAGCACTTGAAGAAGTGGGGATAAGCCTATAA

Peptide Sequence

PEP ID

XP_016514188.1
PEP Infomation

PREDICTED: translation initiation factor IF-2, chloroplastic-like [Nicotiana tabacum]
Sequence

MTSMASLVSLGSVCGCSSGGQFEGSFSLVRRVSLANNFRNFNRIWVGKRWRYVSVCRYSV
TTDFVAADQGTSISLDSSSRNNKEDDADLLLKPSPKPQLKPGPKPGPALGMGPVSRNGPV
SSSGSDDEKGNPNEEERSTVIESLGEALEKAEKLETNRKANVLVNNKSSANARTAQRNSK
PVDSDDSSNRKSKTLKSVWKKGNPVAAIQKVVKPPPPKQEPVADSGIRKSESQTVAPLKP
PQPPQKVQPQLQARPSVAPPPPVIKKPVILKDVGAAAKPPPTDEIESAGKTKERKTILVD
KFASKKPAVDPMIAQAVLAPTKPGKSAPPGRFREEFRKKSGASGGQRRRMVDDGIPDEEA
SELDVSIPGAAARKGRKWTKASRKAARLRAAKESAPVKVEILEVGEEGMPTEELAYNLAT
SEGEILGLLYSKGIKPDGVQTLSNDMVKMVCKEYEVEVIDAATVKVEEMARKKEIFDEDD
LDKLQDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPIDTKPQI
CVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK
IDKDGANPERVMQELSSIGLMPEDWGGDVPMVQISALKGENIDDLLETVMLVAELQELKA
NPQRNAKGTVIEAGLDKSKGPVATFIVQNGTLKGGDVVVCGEAYGKVRALFDDKGKRVDE
AGPSIPVQVIGLNNVPVAGDEFEVVGSLDVAREKAEAREESLRTERLSAKAGDGKITLSS
FASAVSGGTGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLQATGDVTASDV
DLAVASKAIIFGFNVKTPGSVKSYADNKGVEIRLYKVIYELIDDVRKAMEGLLESVEEQV
PIGSAEVRAVFSSGSGRVAGCMVTEGKVVEDCGIRVVRKGKEVHVGVLESLRRVKEAVKE
VNAGLECGIGVEEFDDWEVGDILEAFNSVQKRRTLEEASASMAAALEEVGISL

Transcript Sequence

Gene sequence data has not been registered.